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Home » Data

Standards

Updated 05/8/2020

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Standard protocols or guidelines for TOPMed data acquisition and/or processing

Guidelines for sample randomization in assay performance

Pipielines and Flowcharts

  • TOPMed MESA Pilot RNA-seq Pipeline
  • CORE Year 1 (Phase 3) Whole Genome Sequencing Final Data Format Requirements
  • CORE Year 2 (Phase 4) TOPMed RNA-seq Pipeline
  • CORE Year 2 (Phase 4) TOPMed RNA-seq Pipeline Flowchart
  • CORE Year 3 (Phase 5) TOPMed RNA-seq Pipeline
  • CORE Year 3 (Phase 5) TOPMed RNA-seq Pipeline Flowchart
  • CORE Year 3 (Phase 5) Methylation Array Pipeline

Reporting templates (private access)

  • TOPMed Metabolomics CORE biweekly reporting template
  • TOPMed Methylation CORE biweekly reporting template
  • TOPMed RNA CORE biweekly reporting template
  • TOPMed WGS CORE weekly reporting template

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