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Whole genome sequencing identifies structural variants contributing to hematologic traits in the NHLBI TOPMed program

Submitting Author
Wheeler, Marsha
Submitting Author's Email
Authors
Marsha M. Wheeler*1, Adrienne M. Stilp*2, Shuquan Rao*3, Jia Wen4, Anna V. Mikhaylova2, Caitlin P. McHugh2, John Lane5, Minzhi Jiang4, Laura M. Raffield6, Goo Jun7, Fritz J. Sedlazeck8, Ginger Metcalf8, Yao Yao3, Joshua B. Bis9, Nathalie Chami10, Paul S. de Vries11, Pinkal Desai12, James S. Floyd9, Yan Gao13, Kai Kammers14, Wonji Kim15, Jee-Young Moon16, Aakrosh Ratan17, Lisa R. Yanek14, Laura Almasy18, Lewis C. Becker14, John Blangero19, Michael H. Cho15, Joanne E. Curran19, Myriam Fornage20, Robert C. Kaplan16, Joshua P. Lewis21, Ruth J.F. Loos10, Braxton D. Mitchell21, Alanna C. Morrison11, Michael Preuss10, Bruce M. Psaty9, Stephen S. Rich17, Jerome I. Rotter22, Hua Tang23, Russell P. Tracy24, Eric Boerwinkle11, Goncalo Abecasis25, Thomas W. Blackwell25, Albert V. Smith25, Andrew D. Johnson26, Rasika A. Mathias14, Deborah A. Nickerson1, Matthew P. Conomos2, Yun Li4, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Nathan D. Pankratz*5, Daniel E. Bauer*3, Paul L. Auer**27, Alex P. Reiner**28
Journal name for most current submission
Nat Commun.
Associated TOPMed paper proposal
This manuscript has been approved by the original paper proposal's Working Group(s) or is "single PI"
This manuscript has been approved by the original paper proposal's Working Group(s) or is "single PI"
Acknowledgments
I have followed instructions for TOPMed Acknowledgments
I've received approval for all data sets used in this manuscript, including adding new data sets and canceling all unused ones.
I've received approval for all data sets used in this manuscript, including adding new data sets and canceling all unused ones.
I have followed the Data Use Limitations for each of the data sets used in this manuscript, if applicable.
Yes
I've included at least 1 co-author from each study used in analysis or the PI declined an offer to have their study represented.
Yes
I certify that all co-authors have reviewed and approved the manuscript for submission.
Yes
Upload all necessary study-specific approval documentation.
I've included at least 1 DCC/ACC author, or they declined authorship or deemed acknowledgement sufficient.
I've included at least 1 DCC/ACC author, or they declined authorship or deemed acknowledgement sufficient.
I’ve included at least 1 IRC author, or they declined authorship or deemed acknowledgement sufficient.
I’ve included at least 1 IRC author, or they declined authorship or deemed acknowledgement sufficient.
I've included at least 1 author from relevant omics center(s) or they declined authorship or deemed acknowledgement sufficient.
I've included at least 1 author from relevant omics center(s) or they declined authorship or deemed acknowledgement sufficient.

TOPMed data used in this manuscript

The data set approvals listed here should match the TOPMed data used in this manuscript.

Don't see all the data sets you need? Request more data sets at any time.

Please "cancel" any data set requests that were not used in this manuscript. Note: only the paper proposal submitter or their designated updater can cancel data sets.

Parent Study: Consent Group Review Status
ARIC:DS-CVD-IRB Approved automatically after 2 weeks
ARIC:HMB-IRB Approved automatically after 2 weeks
Amish:HMB-IRB-MDS Approved
BioMe:HMB-NPU Approved
Boston-Brazil_SCD:HMB-IRB-COL Request cancelled by original requester
CARDIA:HMB-IRB Approved automatically after 2 weeks
CARDIA:HMB-IRB-NPU Approved automatically after 2 weeks
CHS:DS-CVD-MDS Approved
CHS:DS-CVD-NPU-MDS Approved
CHS:HMB-MDS Approved
CHS:HMB-NPU-MDS Approved
COPDGene:HMB Approved
EOCOPD:DS-CS-RD Request cancelled by original requester
FHS:HMB-IRB-MDS Approved automatically after 2 weeks
FHS:HMB-IRB-NPU-MDS Approved automatically after 2 weeks
GeneSTAR:DS-CVD-IRB-NPU-MDS Approved
HCHS_SOL:HMB Approved automatically after 2 weeks
HCHS_SOL:HMB-NPU Approved automatically after 2 weeks
JHS:DS-FDO-IRB Approved
JHS:DS-FDO-IRB-NPU Approved
JHS:HMB-IRB Approved
JHS:HMB-IRB-NPU Approved
MESA:HMB Approved
MESA:HMB-NPU Approved
PharmHU:DS-SCD Request cancelled by original requester
PharmHU:DS-SCD-RD Request cancelled by original requester
PharmHU:HMB Request cancelled by original requester
REDS-III_Brazil:GRU-IRB-PUB-COL-NPU Request cancelled by original requester
WHI:HMB-IRB Approved
WHI:HMB-IRB-NPU Approved
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