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Accounting for population structure in genetic studies of cystic fibrosis

Manuscript ID: 13064

Submitting Author
Blue, Elizabeth
Submitting Author's Email
Authors
Hanley Kingston,1 Adrienne M. Stilp,2 William Gordon,3 Jai Broome,4 Stephanie M. Gogarten,2 Hua Ling,5 John Barnard,6 Shannon Dugan-Perez,7 Patrick T. Ellinor,8,9 Stacey Gabriel,10 Soren Germer,11 Richard A. Gibbs,7 Namrata Gupta,10 Kenneth Rice,2 Albert V. Smith,12 Michael C. Zody,11 The Cystic Fibrosis Genome Project, Scott M. Blackman,13 Garry Cutting,14 Michael R. Knowles,15 Yi-Hui Zhou,16 Margaret Rosenfeld,17,18 Ronald L. Gibson,17,18 Michael Bamshad,3,17,19,20 Alison Fohner,1,21 Elizabeth E. Blue,1,4,20*
Affiliations:
1: Institute for Public Health Genetics, University of Washington, Seattle, Washington, 98195, USA
2: Department of Biostatistics, University of Washington, Seattle, Washington, 98195, USA
3: Department of Pediatrics, Division of Genetic Medicine, University of Washington, Seattle, Washington, 98195, USA.
4: Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, Washington, 98195, USA
5: Department of Genetic Medicine, Center for Inherited Disease Research, Johns Hopkins University School of Medicine, Baltimore, Maryland, 21205, USA
6: Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, 44195, USA
7: Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, 77030, USA.
8: Cardiovascular Disease Initiative, The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, 02124, USA
9: Cardiovascular Research Center, Massachusetts General Hospital, Boston, Massachusetts, 02114, USA
10: Broad Institute of MIT and Harvard, Cambridge, Massachusetts, 02142, USA
11: New York Genome Center, 101 Avenue of the Americas, New York, New York, 10013, USA
12: Department of Biostatistics, University of Michigan, Ann Arbor, Michigan, 48109, USA
13: Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, Maryland, 21287, USA
14: McKusick-Nathans Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, 21287, USA
15: Marsico Lung Institute/UNC CF Research Center, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, 27599, USA
16: Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, 27797, USA
17: Center for Clinical and Translational Research, Seattle Children’s Hospital, Seattle, Washington, 98105, USA
18: Department of Pediatrics, University of Washington, Seattle, Washington, 98195, USA
19: Department of Genome Sciences, University of Washington, Seattle, Washington, 98195, USA
20: Brotman Baty Institute for Precision Medicine, Seattle, Washington, 98195, USA
21: Department of Epidemiology, University of Washington, Seattle, Washington, 98195, USA
*Correspondence: Elizabeth E. Blue, Email: em27@uw.edu 
Journal name for most current submission
Human Genetics and Genomic Advances
Associated TOPMed paper proposal
This manuscript has been approved by the original paper proposal's Working Group(s) or is "single PI" *
This manuscript has been approved by the original paper proposal's Working Group(s) or is "single PI"
Acknowledgments
I have followed instructions for TOPMed Acknowledgments
I've received approval for all data sets used in this manuscript, including adding new data sets and canceling all unused ones. *
I've received approval for all data sets used in this manuscript, including adding new data sets and canceling all unused ones.
I have followed the Data Use Limitations for each of the data sets used in this manuscript, if applicable. *
Yes
I've included at least 1 co-author from each study used in analysis or the PI declined an offer to have their study represented. *
Yes
I certify that all co-authors have reviewed and approved the manuscript for submission. *
Yes
I've included at least 1 DCC/ACC author, or they declined authorship or deemed acknowledgement sufficient.
I've included at least 1 DCC/ACC author, or they declined authorship or deemed acknowledgement sufficient.
I’ve included at least 1 IRC author, or they declined authorship or deemed acknowledgement sufficient.
I’ve included at least 1 IRC author, or they declined authorship or deemed acknowledgement sufficient.
I've included at least 1 author from relevant omics center(s) or they declined authorship or deemed acknowledgement sufficient.
I've included at least 1 author from relevant omics center(s) or they declined authorship or deemed acknowledgement sufficient.

TOPMed data used in this manuscript

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Parent Study: Consent Group Review Status Actions
CCAF:GRU-IRB Approved automatically after 2 weeks
ChildrensHS_IGERA:GRU Request cancelled by original requester
EGCUT:GRU Request cancelled by original requester
GGAF:GRU Request cancelled by original requester
Mayo_VTE:GRU Approved automatically after 2 weeks
SARP:GRU Approved automatically after 2 weeks
VU_AF:GRU-IRB Approved
miRhythm:GRU Approved automatically after 2 weeks
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