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Trans-ethnic GWAS meta-analysis of tobacco and alcohol use

Authors
MengZhen Liu
Trans-Omics for Precision Medicine (TOPMed)
GWAS & Sequencing Consortium of Alcohol and Nicotine use (GSCAN)
Name and Date of Professional Meeting
ASHG October 2019
Associated paper proposal(s)
Working Group(s)
Abstract Text
Alcohol and nicotine use are together the largest preventable causes of morbidity and mortality in the United States. While there has been a steady decline of cigarette smoking in the US, in 2017 the 1-year prevalence of current smoking was 14%, with a disproportionate rate of use among individuals from disadvantagedbackgrounds. Regular alcohol use and misuse remains a persistent issue across a majority of Americans, and is associated with a range of medical issues including liver damage and neuropsychiatric impairments. Previous genetic association research has focused predominantly on individuals of European ancestry. We expand upon existing research by conducting a GWAS meta-analysis of alcohol and nicotine use across multiple ancestries. Our approach maximizes power for variant detection, allows evaluation of ancestry-specific variant effects, and provides greater fine-mapping resolution. We have conducted a meta-analysis in over 3.4 million individuals of diverse ancestry to discover genetic variation contributing to multiple stages of smoking including whether an individual has ever been a regular smoker (N=3,377,408 from 75 studies discovering 780 loci [404 novel]), age of initiation of regular smoking (N=731,870; 64 studies; 39 loci [30 novel]), cigarettes per day (N=782,790; 81 studies; 157 loci [103 novel]), smoking cessation (N=1,400,906; 742,222 studies, 112 loci [91 novel]), as well as drinks per week, a measure of alcohol consumption (N=2,896,131; 62 studies; 376 loci; [286 novel]). The largest non-European ancestry subset is composed of individuals of East Asian ancestry, with sample sizes ranging from N=62,943 for age of initiation of regular smoking to 293,145 for ever/never smoker status. We will report trans-ethnic discovery and evidence for ancestry-moderated variant effects, as well as heritabilities and utility of polygenic scores from this dataset.
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